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SRX000379: 454 sequencing of Human HapMap individual NA12815 genomic paired-end library
19 LS454 (454 GS FLX) runs: 9.8M spots, 2.6G bases, 5.4Gb downloads

Design: FLX paired-end
Submitted by: Baylor College of Medicine (BCM)
Study: 1000 Genomes Project Pilot 1 (low coverage sequencing of 180 Hapmap individuals from multiple populations.
show Abstracthide Abstract
1000 Genomes first pilot study: Low coverage sequencing of 180 individuals. <P>The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. Specifically defined goals are (a) the discovery of single nucleotide variants at frequencies of 1% or higher in diverse populations, (b) even more comprehensive discovery (variants down to frequencies of 0.1 - 0.5%) in functional gene regions, and (c) discovery of structural variants, such as copy number variants, other insertions and deletions, and inversions, including sequence-level understanding of breakpoints.</P> <P>The volume of data generated by 1000genomes project is unprecedented.</P> The data is accessible from two mirrored ftp sites at <A HREF="ftp://ftp.1000genomes.ebi.ac.uk">EBI</A> and <A HREF="ftp://ftp-trace.ncbi.nih.gov/1000genomes/">NCBI</A>.
Sample: Coriell GM12815
SAMN00801774 • SRS000085 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: 4WG_HSAP.TG_005pA
Instrument: 454 GS FLX
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
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Runs: 19 runs, 9.8M spots, 2.6G bases, 5.4Gb
Run# of Spots# of BasesSizePublished
SRR001512435,165114.6M253.3Mb2008-07-01
SRR001513476,784132.6M291.2Mb2008-07-01
SRR001514519,361136.3M293.6Mb2008-07-01
SRR001515411,003108.2M231.7Mb2008-07-01
SRR001516506,418134.1M292.2Mb2008-07-01
SRR001517450,349118.9M258.1Mb2008-07-01
SRR001518568,452148.2M310.5Mb2008-06-23
SRR001519583,860153.8M326.9Mb2008-07-01
SRR001520539,405142.6M309.4Mb2008-07-01
SRR001521420,123111.2M241.1Mb2008-07-01
SRR001522430,850113.7M241.9Mb2008-07-01
SRR001523591,595154.6M325.3Mb2008-07-01
SRR002376498,257129.6M279Mb2008-08-14
SRR002377529,730138.4M301.4Mb2008-08-14
SRR002378527,458137.2M295.5Mb2008-08-14
There are 4 omitted runs. See all runs in Run Selector.

ID:
380

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